Nanopore Resources
The Nanopore Site
Welcome to our Nanopore Resources page, your guide to learning and exploring the Nanopore field. Discover a collection of tutorials, webinars, analysis software, and scientific papers to enhance your knowledge and expertise. If you have links to content or papers that you believe would benefit others in the field, please feel free to reach out and share.
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If you know of other papers that you think should be on this list that fit with this theme, please contact us. This list is reviewed and updated quarterly with selected publications that assist with the process of onboarding new researchers into the field.
Review Articles
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L. Xue, H. Yamazaki, R. Ren, M. Wanunu, A. P. Ivanov, and J. B. Edel. Solid-state nanopore sensors, Nat Rev Mater, vol. 5, no. 12, pp. 931–951, 2020, https://doi.org/10.1038/s41578-020-0229-6
S. Lindsay, The promises and challenges of solid-state sequencing. Nat Nanotechnol, vol. 11, no. 2, pp. 109–111, 2016, https://doi.org/10.1038/nnano.2016.9
Yi-Lun Ying, Zheng-Li Hu, Shengli Zhang, Yujia Qing, Alessio Fragasso, Giovanni Maglia, Amit Meller, Hagan Bayley, Cees Dekker & Yi-Tao Long. Nanopore-based technologies beyond DNA sequencing, Nat Nanotechnol, vol. 17, no. 11, pp. 1136–1146, 2022, https://doi.org/10.1038/s41565-022-01193-2
Muhammad Sajeer P, Simran, Pavan Nukala, Manoj M. Varma. TEM based applications in solid state nanopores: From fabrication to liquid in-situ bio-imaging, Micron, vol. 162, 103347, 2022, https://doi.org/10.1016/j.micron.2022.103347
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Jasper P. Fried, Jacob L. Swett, Binoy Paulose Nadappuram, Jan A. Mol, Joshua B. Edel, Aleksandar P. Ivanov and James R. Yates. In situ solid-state nanopore fabrication, Chem Soc Rev, vol. 50, no. 8, pp. 4974–4992, 2021, https://doi.org/10.1039/d0cs00924e
Deamer, D., Akeson, M. & Branton, D. Three decades of nanopore sequencing. Nat Biotechnol 34, 518–524 (2016). https://doi.org/10.1038/nbt.3423
Kasianowicz, J., Bezrukov, S. On 'three decades of nanopore sequencing'. Nat Biotechnol 34, 481–482 (2016). https://doi.org/10.1038/nbt.3570
Albrecht, T.; Ayub, M.; Freedman, K. J.; Gibb, T.; Goyal, G.; Kim, M. J.; Keyser, U. F.; Nuttall, P.; Otto, O.; Prabhu, A. S.; Robertson, J. W. F.; Tabard-Cossa, V.; Edel, J. B. Engineered Nanopores for Bioanalytical Applications; Edel, J. B., Albrecht, T. B. Eds.; William Andrew Publishing: Oxford, 2013. https://doi.org/https://doi.org/10.1016/B978-1-4377-3473-7.00008-X
Meni Wanunu. Nanopores: A journey towards DNA sequencing. Physics of Life Reviews,
vol. 9, no 2, 2012, pp. 125–158, https://doi.org/10.1016/j.plrev.2012.05.010
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Tutorials
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Solid-state nanopores
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https://www.youtube.com/@nanopores
https://www.solidstatenanopore.com/blog
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Sequencing
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https://labs.epi2me.io/tutorials/
https://www.hadriengourle.com/tutorials/nanopore/
https://www.youtube.com/watch?v=IknVaEnuDz0
https://nanoporetech.com/resource-centre
Webinars
https://www.solidstatenanopore.com/webinar-1-recording
https://www.solidstatenanopore.com/webinar-2-recording
https://www.solidstatenanopore.com/webinar-3-recording
https://nanoporetech.com/events/nanopore-seminars-online-series
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Analysis Software
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Generalized Analysis
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https://www.solidstatenanopore.com/analysis-software
https://www.epfl.ch/labs/lben/opennanopore-python/
https://github.com/voyn/transalyzer
https://pages.nist.gov/mosaic/
https://github.com/kmisiunas/QuipuNet
https://bastlabs.org/eventpro.html
Basecalling
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https://github.com/GoekeLab/awesome-nanopore
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